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Antibody News

RAD50 and DNA Damage Response

Monday, February 17, 2014 - 11:26

DNA repair protein RAD50 is a component of the MRN complex (Mre11-RAD50-Nbs1) responsible for DNA double strand break (DSB) repair. DSBs are caused by ionizing radiation, certain chemotherapy drugs, metabolic reactive oxygen species (ROS), replication errors, and programmed enzymatic activity during meiosis or V(D)J recombination.  If left unrepaired, DSBs generate extremely problematic chromosomal translocations, aneuploidy, and carcinogenesis. As a DSB sensor, RAD50 detects and signals the presence of DSBs. RAD50 is a co-activator for DSB-induced cell cycle checkpoint signaling, and operates as a repair-effector in two competing repair pathways: homologous recombination (HR) as well as...

Understanding DNA Recombination with Cre-Lox

Friday, February 14, 2014 - 13:06

Cyclization recombination enzyme (Cre) is a member of the extensive family of recombinases and recognizes a 34 bp sequence motif from PI bacteriophage referred to as LoxP. The Cre enzyme works to cleanly excise an intervening DNA fragment that is flanked by two LoxP sites. The LoxP sites must be present in the same orientation. The excised segment is later degraded to leave only a single LoxP site copy in the starting target molecule. As Cre was first developed in the late 1980's and heavily used to artificially manipulate gene expression in many systems, there are comprehensive reviews of the Cre/lox system in the literature (1). Additionally, because the Cre/Lox system is very compatible in terms of versatility, it can be applied to a wide variety of cell types, such that there are numerous stable bacterial, plant, and animal stocks containing a Cre gene copy controlled under an assortment of useful promoters - ubiquitous, tissue-specific, inducible...

Understanding OPA1 and Mitochondrial Function

Thursday, February 13, 2014 - 15:44

OPA1 belongs to the Dynamin large GTPase protein family. OPA1 exists as a single-pass membrane protein localized in the mitochondrial inner membrane and also as a soluble form in the mitochondrial intermembrane space. There, it is a key player in fusion of the inner mitochondrial membrane as well as maintenance of the cristae architecture. The oligomerization of differentially processed forms of OPA1 directs mitochondrial membrane formation. It is expressed in brain, retina, testis, heart, and skeletal muscle. In response to intrinsic apoptotic signals, OPA1 proteolytic processing may lead to disassembly of the oligomers, allowing release of caspase activator Cytochrome C into the intermembrane space. The OPA1 form S1 is its inactive form resulting by cleavage by the...

Controlling Epigenetic Signaling with Dnmt1 and Dnmt3b

Wednesday, February 12, 2014 - 13:27

Dnmt1 belongs to the C5-methyltransferase family that repairs cytosines in dsDNA using a nucleophilic attack mechanism. Dnmt1 is the most abundant mammalian DNA methyltransferase. It is the key methylation maintenance enzyme for both DNA replication/repair and de novo methylation during somatic cell development and differentiation. It primarily acts upon CpG residues, with a preference for hemimethylated residues, but is capable of methylating unmethylated DNA more than other Dnmt enzymes. In cell division, it is essential for epigenetic inheritance because it associates with S-phase DNA replication sites to maintain the methylation pattern in newly synthesized strand. To maintain DNA methylation independently of replication, Dnmt1 routinely cycles through different states of complex formation and localization. It...

c-Myc. See Myc Run Transcription Regulation

Monday, February 10, 2014 - 15:09

Myc genes (L-Myc, N-Myc and C-Myc) are a family of transcription factors. c-Myc is involved in transcription regulation, apoptosis and cell growth. Mutations in c-Myc have been tied to several cancers.

 

Free sample bonus: Get a free sample on select c-Myc antibodies during the month of February! Get your c-Myc antibody free sample now.

 

c-Myc Infographic

Download the c-Myc infographic 

 

Novus Biologicals offers c-Myc...

Winter Protein Games

Friday, February 7, 2014 - 11:42

Get into the Winter Protein Games 2014! Check out the contenders competing including SKI, POLE, ICEBURG, SKT, TRAIL, WIN and BOB1. Learn more about each protein's function, gene name, molecular weight and family.

View all the fun and games happening in our Winter Protein Games Infographic below.

Winter Protein Games

Novus Biologicals offers reagents for each target:

1. SKI

2. POLE

3. ICEBERG

4. SKT

5. TRAIL

6. WIN

7. BOB1

...

ATM and DSB Repair in Cancer

Thursday, February 6, 2014 - 12:52

Ataxia Telangiectasia Mutated (ATM) is a serine/threonine protein kinase that is the master regulator of the DNA double-strand break (DSB) repair pathway. ATM is a key part of the cell cycle machinery that activates checkpoint signaling in response to DSBs, apoptosis, and genotoxic insults. ATM normally exists in its inactive state as a dimer or tetramer - upon DNA damage, it dissociates into monomers triggered by its own autophosphorylation. This activated state binds and acts upon a large variety of different signaling molecules ranging from ABL1, p53, BRCA1, and RAD9. Not surprisingly, given the wide range of binding partners, ATM has a varied host of functions including vesicle and protein transport, T-cell development, cell...

Understanding Noxa Regulation of Apoptosis

Wednesday, February 5, 2014 - 10:45

Noxa is a pro-apoptotic gene belonging to the Bcl2 protein family that is unique in that it contains only BH3 domain. The BH3-only subclass of proteins, including proteins like PUMA and Bim in addition to Noxa, regulate the remaining Bcl-2 family members. Due to the key roles these proteins play in this critical pathway, BH3-only proteins have great promise as therapeutic targets for cancers such as leukemias, as well as autoimmune diseases, as discussed in extensive reviews by Zhang, et al. and Cottier, et al. (1,2).

MTH1: Effects on DNA Damage Repair, Cancer and Neurodegeneration

Monday, February 3, 2014 - 16:01

MTH1 (human MutT Homolog 1) is a purine nucleoside triphosphatase enzyme and belongs to the Nudix hydrolase family. In mammalian systems, MTH is a major detoxifier of the oxidized DNA precursors, 8-oxo-dGTP, 8-oxo-dATP, and 2-OH-dATP and prevents the misincorporation of these purine nucleoside triphosphates into DNA and the subsequent occurrence of A:T pairs to C:G and G:C to T:A pair transversions. The MTH enzyme can also hydrolyze the corresponding ribonucleotides, 8-oxo-GTP, 8-oxo-ATP, and 2-OH-ATP. It is antimutagenic and suppresses cell dysfunction and/or death induced by oxidative stress, and MTH1 deficiency increases cells’ susceptibility to oxidative damage-mediated dysfunction. The MTH1 enzyme is found mostly in the cytoplasm, but also in the nucleus and mitochondria, with highest expression levels in tissue types such as the thymus, testis, and embryo. In the types of...

Regulating Immune Response Pathways with IKK beta

Wednesday, January 29, 2014 - 14:52

IKK beta, also known as IKK2, activates the NFkB complex by phosphorylating the NFkB inhibitor, IkBa. Several transcript variants, some protein-coding and some not, have been found for IKKB. The Nuclear Factor-kappa B (NF-kB) family of transcription factors regulates the expression of a wide range of genes critical for immune and inflammatory responses, cell survival, immune development, and cell proliferation (1). NF-kB was firstly identified by Dr. Ranjan Sen in the lab of Nobel Prize laureate David Baltimore as a regulator of kB light chain expression in mature B and plasma cells (2). Years of research following this discovery demonstrated that NF-kB is expressed in almost all cell types and tissues, and specific NF-kB binding sites are present in the promoters/enhancers of a large number of genes.

The NF-kB family contains five structurally related members named p50 and p52 (...

Cytochrome C in Apoptosis, Immune Response and Cancer

Monday, January 27, 2014 - 12:22

Cytochrome C is an electron carrier protein that localizes in mitochondrion intermembrane space and has been identified as one of the key signaling molecules of apoptosis or programmed cell death. Suppression of the anti-apoptotic members or activation of the pro-apoptotic members of the Bcl2 family leads to altered mitochondrial membrane permeability resulting in release of cytochrome c into the cytosol. Binding of cytochrome C to Apaf1 triggers the activation of Caspase 9, which then accelerates apoptosis by activating other caspases.

This protein has been involved in the following super pathways: TWEAK Pathway; Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins; Apoptosis...

IKK alpha: Roles in Development, B-cell Survival and ESC Differentiation

Friday, January 24, 2014 - 13:54

Inhibitor of nuclear factor kappa-B kinase subunit alpha (IKK1 alpha) is a serine/threonine kinase that forms a complex with IKK beta and NEMO. It plays an essential role in embryonic skin development. Mice with low levels of IKKa show an increase in squamous cell carcinoma and overexpression of IKK-α in the skin of these mice abrogates tumor formation (1).

IKK-alpha has also been shown to play a role in B-cell maturation and survival.  BAFF is a soluble signal molecule that is required for B-cell survival and signals through an IKK-α regulated NFkB pathway.  Deletion of IKK-a during B-cell development inhibits B-cell maturation and BAFF-dependent survival but deletion IKK-α in mature B-cells shows no effect.  This study indicates that IKK-α plays an important role in B-cell development and survival (2).

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The MRE11 Complex and DNA Damage Response

Thursday, January 23, 2014 - 11:19

The maintenance of genome stability depends on the DNA damage response (DDR) which is a complex signaling network including cell cycle checkpoints, DNA repair and damage tolerance pathways. The DDR complex has the ability to sense DNA damage and transduce this information to the cell to influence cellular response to it. Failure of the DDR or associated events causes genomic instability, an underlining cause of several human syndromes and also associated with various age-related diseases, particularly cancer. The DDR pathway is initiated upon recognition of the DNA lesion by sensor proteins, followed by rapid and, in many cases, reversible changes in cell behavior. The DDR can also trigger specialized programs, such as...

DNMT3B: Roles in Leukemia

Wednesday, January 22, 2014 - 12:55

DNA-methyltransferase 3B (DNMT3B), also known as DNA methyltransferase HsaIIIB, is a member of the class I-like SAM-binding methyltransferase superfamily and C5-methyltransferase family. DNMT3B plays an essential role in the establishment of DNA methylation patterns during development and is vital for genome-wide de novo methylation.

DNMT3B has been linked to two distinct types of leukemia in recent studies: acute myeloid leukemia (AML) and juvenile myelomonocytic leukemia (JMML).  In AML, myeloid blood cells become cancerous and cause rapid production of abnormal while blood cells in the bone marrow, which in turn, affects production of regular blood cells (1).  A mutation of the DNMT3B gene is frequently found in patients with AML (2).  Studies have found a correlation between overexpression of DNMT3B and...

OXPAT: Regulating Lipid Metabolism during Dietary Fluctuations

Monday, January 20, 2014 - 13:42

OXPAT is the mammalian form of the PAT (perilipin, adipophilin, and TIP47) gene family that consists of proteins associated with lipid droplets (LDs) in fat-storing adipocyte cells. They serve to protect LDs from natural lipases responsible for breaking them down during metabolism and are important lipid storage regulators. This phosphoprotein family has fundamental importance in lipolysis and cholesterol synthesis. OXPAT is expressed highest in high fat-oxidative tissues, such as heart, type I skeletal muscle, and brown adipose tissue and is found complexed with adipophilin in cardiomyocytes.

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APE1: No Monkeying Around During DNA Repair

Friday, January 17, 2014 - 10:49

Apurinic/apyrimidinic (AP) endonuclease 1 (APE1) plays an important role in the DNA base excision repair pathway. APE1 repairs damaged or mismatched nucleotides in DNA by hydrolyzing the phosphodiester backbone at apurinic/apyrimidinic sites (AP sites) which produces 5'-deoxyribose phosphate and a 3'-OH primer which is needed for repair synthesis.  It has an absolute requirement for Mg2+ as a cofactor.  Recently, the structure of APE1 with the Mg2+ cofactor was elucidated (1).

APE1 has recently been shown to play a role in regulating tumor angiogenesis.  Clinical data suggests that APE1 upregulates fibroblast growth factor 2 (FGF2) and its receptor, fibroblast growth factor receptor 3 (...

NuMA: The Key to Asymmetric Cell Division

Thursday, January 16, 2014 - 14:34

Nuclear Mitotic Apparatus protein (NuMA) is a cell cycle-related protein that acts as an organizer of the mitotic spindle during mitosis. It may be involved in coordinating the alignment of the mitotic spindle to the cellular polarity axis, which is a prerequisite for asymmetric cell division. NuMA is also a prominent component of interphase cell nuclear matrix; however its role during interphase is largely unknown. It occupies the majority of the nuclear volume and is required for maintenance as well as establishment of the mitotic spindle poles, functioning as a tether linking bulk microtubules of the spindle to centrosomes.

Among its related super-pathways are apoptosis, the survival Caspase cascade and G2/M Transition. It is degraded in early apoptosis. Diseases associated with NUMA1 include acute promyelocytic leukemia, breast cancer susceptibility, measles, transitional cell...

CENPF: At the Center-o'-mere Mitotic Division (Infographic)

Wednesday, January 15, 2014 - 14:45

Centromere protein F (CENPF) also known as Mitosin, AH antigen, and kinetochore protein CENPF, is a protein that associates with the centromere-kinetochore complex. CENPF forms both a homodimer and a heterodimer. CENPF can be found in different cellular locations depending on the stage of mitosis. During G2 phase of interphase, CENPF is found in the nuclear matrix.  During late G2 into early anaphase, CENPF associates with the kinetochore.  In late anaphase into telophase, CENPF localizes to the spindle midzone and intracellular bridge.  CENPF is degraded by the end of cellular division (1).  The migration of CENPF is regulated by Forkhead transcription factor FoxM1 (2). Accumulating evidence suggests that CENPF is an important protein involved in chromosome alignment and kinetochore-microtubule interaction.  Learn more about CENPF in our infographic below.

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Novus Launches Initiative to Uncover the Antibody User's Ideal Experience

Tuesday, January 14, 2014 - 10:09

The availability of commercial antibodies for a myriad of scientific applications has had a profound positive impact on life science research. It's not surprising that the global antibody market, including therapeutics, diagnostics, and research, is now estimated at $70-75 billion.

And yet, almost half of 400 antibody users surveyed by 1DegreeBio in 2012 reported that that in 50% of cases, their antibodies did not work as expected. That’s a lot of failed experiments—and a lot of money wasted.

In some cases, user error is most certainly a factor. But there are many other problems, all beyond the scientist’s control. It could be that suppliers do not provide adequate protocols and product documentation. It could be a lack of appropriate antibody validation. It could be poor specificity, or too much variability. All these are experimental issues that can contribute to poor antibody performance, yet troubleshooting them can be difficult and ultimately ineffective.

...

RBFOX3: Binding RNA, like a FOX

Monday, January 13, 2014 - 12:44

NeuN is a RNA-binding protein that modulates alternative splicing and is localized both to the nucleus and cytoplasm. It is a member of the RNA-binding FOX (RBFOX) family of splicing regulators which includes RBFOX1 (Fox-1/A2BP1) and RBFOX2 (Fox-2/RBM9). Each FOX family member is differentially expressed – RBFOX1 in neurons, heart, and muscle while RBFOX3 is exclusively limited to neurons. RBFOX2 has a broader profile that includes the earlier mentioned tissues as well as in embryos, hematopoietic cells, and embryonic stem cells. All FOX proteins have one RNA-binding recognition domain that binds the (U)GCAUG sequence found within introns flanking alternative exons and initiates splicing.

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SCP3: A Key to Meiotic Recombination, Sterility and Cancer

Friday, January 10, 2014 - 09:49

Synaptonemal Complex Protein 3 (SCP3), which is a protein present in the synaptonemal complex which is responsible for pairing, synapsis, and recombination of homologous chromosomes during meiosis. Meiosis, in basic terms, is where germ cells divide to produce gametes. This is accomplished through DNA replication and two rounds of cell division. During this process, chromosomes exchange segments with each other in a process called recombination. SCP3 is found in germ cells, testes and ovaries. Mutated SCP3 has been studied extensively in male sterility. A defect in this protein has been found to cause certain spermatogenic failure, which results in no sperm being present in the ejaculate. In recent years, SCP3 has been studied as a cell transformation marker with prognostic significance in several types of...

NBS1: The DNA Repair Trigger

Wednesday, January 8, 2014 - 13:35

NBS1 (Nijmegen breakage syndrome protein 1) is a component of the MRN complex (Mre11-Rad50-Nbs1) that plays important role in detecting DNA double strand breaks (DSBs) and triggering the downstream cascade. DSBs can be caused by ionizing radiation, chemotherapy drugs, metabolic ROS, replication errors, programmed enzymatic activities during meiosis/V(D)J recombination, etc. NBS1 acts as a DSB sensor, co-activator of DSB-induced cell cycle checkpoint signaling, and also the repair-effector via two competing DSB repair pathways - homologous recombination (HR) and non-homologous end-joining (NHEJ). The MRN complex also associates with...

xCT: The Membrane's Gatekeeper

Monday, January 6, 2014 - 12:23

xCT is an obligate, electroneutral, membrane-bound anionic transporter responsible for regulating particular amino acid gradients via their transport through plasma membrane. The antiporter xCT superficially resembles an ion channel and preferentially catalyzes the exchange of L-cystine for L-glutamate residues in animal cells. Unlike other glutamate transporters like EAATs, xCT functions independently of an electrochemical sodium ion gradient. xCT is present in most peripheral tissues (heart, bone, liver, and testes). The xCT system is involved in antioxidation protection, stress, and intracellular redox balance. Balza’s group employed the xCT antibody in their chemopreventive and therapeutic efficacy studies with cyclooxygenase (COX) inhibitors on in vivo mouse sarcoma models (1). Their promising results suggest that combination targeting chemopreventive and therapeutic treatments could be...

LDL Receptor: Low Density, High Importance

Friday, January 3, 2014 - 13:09

The low density lipoprotein receptor coordinates the metabolism of cholesterol, an essential component of the mammalian cell plasma membranes. Study of this carefully balanced system has led to an enhanced understanding of cholesterol homeostasis at the cellular level. Receptor-mediated endocytosis (RME) is an important mechanism of metabolic regulation. Garbarino’s group used LDL receptor antibody and small hairpin RNA knockdown to show that knockdown of STARD4 in hepatocytes disrupts cholesterol trafficking between the plasma membrane, endoplasmic reticulum (ER), and endocytic recycling compartment (ERC...

Caveolin 1 Signaling and Cancer Progression

Thursday, January 2, 2014 - 11:07

Caveolin-1 (CAV1) belongs to the caveolin family of integral membrane proteins 21-24 kD in size. This family of proteins forms the structural component of the caveolar membrane in caveolae, which are the specialized domains in plasma membrane that sequester lipids and proteins. Both Caveolin 1 and Caveolin 2 are abundantly expressed in fibroblasts, differentiated adipocytes, smooth and skeletal muscle and, endothelial cells, whereas the related Caveolin 3 protein is limited to muscular tissue expression. Caveolin 1 interacts with a broad range of proteins including GLIPR2, Nostrin, SNAP25, syntaxin, rotavirus A NSP4, CD26, beta Catenin, CDH1,...

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