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Antibody News

CD45 - Much more than just a housekeeping protein

Friday, May 30, 2014 - 13:47

CD45, also known as T200 or the Leukocyte Common Antigen (LCA), is encoded by the Protein Tyrosine Phosphatase Receptor type C (PTPRC) gene. The protein is expressed exclusively on cells of the haematopoietic system, and is one of the most abundant leukocyte cell surface glycoproteins (1). Different isoforms of CD45 are found on specific lymphocyte sub-populations, and are generated by alternative splicing. (2). At least four variants of the human protein can be distinguished by electrophoresis, with molecular weights ranging from 180-220kDa (3). B cells have been shown to express a 220kDa protein, while thymocytes express a 180kDa variant (2).

CD45 is a member of the Protein Tyrosine Phosphatase (PTP) family, which is comprised of more than 100 human genes (4). PTPs were originally believed to be housekeeping proteins, responsible simply for the dephosphorylation of tyrosine residues, however they are now known to play key...

TRPM8: The Multi-functional Ion Channel

Thursday, May 29, 2014 - 16:05

TRPM8 is a transmembrane homo-tetramer ion channel that is activated by cold temperatures, cooling agents, and menthol stimuli. It belongs to a subgroup within the larger family of TRP cation channels (including the TRPV1 capsaicin receptor) that are named after the melastatin protein. These proteins are also known chanzymes due to their C-terminus enzyme domains. TRPM8 contains a voltage sensor as well as a binding domain for channel agonists such as menthol and icilin. Upon activation, it allows sodium and calcium entry, causing the creation of an action potential through depolarization. It is expressed in sensory neurons where it appears to play a role in neurite outgrowth, signaling, and apoptosis in response to noxious stimuli.

Immunohistochemistry: TRPV1 Antibody...

Melanoma Infographic

Tuesday, May 27, 2014 - 12:48

Melanoma is caused by DNA damage to melanin producing cells. Common warning signs of melanoma are changes in color, size, and shape of skin/moles, new growth areas on the skin, and sores that do not heal. Protection from sun exposure and ultraviolet rays as well as regularly examining changes to skin are important for prevention.

Melanoma Infographic

Resources

  1. Cancer.org 
  2. Skincancer.org ...

You can't be without me - SNF5

Friday, May 23, 2014 - 13:19

The protein encoded by SNF5 is a component of the chromatin-remodeling protein complex responsible for relieving repressive chromatin structures by allowing the transcriptional machinery to access targets more effectively. SNF5 has been found to be a tumor suppressor, and mutations within it are associated with some malignant tumors. Two transcript variants encoding different isoforms exist. Scurr’s group published interesting findings on effector proteins in senescence in Cell1. There, they immunoblotted with the SNF5 antibody to monitor B-Raf and IGFBP7 protein expression levels in several melanoma cell lines, and found that lentiviral-silencing of secreted IGFBP7 does not affect  senescence in melanocytes and fibroblasts.

p73: An Important Tumor Suppressor Cousin of p53

Thursday, May 22, 2014 - 16:06

p73 has been identified as a long-lost cousin of the p53 tumor suppressor protein. It has high homology with both p53 and with p63, a gene implicated in the maintenance of epithelial stem cells. The presence of significant homology between the DNA-binding domains of p53, p63, and p73 suggest that they have overlapping functions. Targeted disruption of p73 leads to defects hippocampal dysgenesis, hydrocephalus, chronic inflammation, and infections. A German group used the p73 antibody in immunoprecipitation studies using directed expression of dominant-negative p73 to restore cell cycle progression in cardiomyocytes and improve cardiac regeneration1. Kravchenko’s group examined the ability of the small molecule RETRA to suppress mutant-bearing cancer cells using the p73 antibody2. Based on their studies, it appears that a mutant p53-73...

OS9: Taking proteins to the ER finish line

Wednesday, May 21, 2014 - 15:01

The OS9 protein is a lectin/glycoprotein that maintains endoplasmic reticulum (ER) quality control and ER-associated degradation (the so-called ERAD pathway) of newly synthesized proteins. It is essential for the recognition of terminally misfolded non-glycosylated proteins and improperly folded glycoproteins, and binds to them to allow first their retention in the ER, and then second, subsequent transfer to the degradation machinery. The cation-selective channel TRPV4 is OS9's major target. OS9 forms part of the HRD1 ubiquitin ligase complex (SYVN1/HRD1 and SEL1L) which is involved in the retro-translocation of misfolded proteins from the ER to cytosol for ubiquitin-dependent degradation. OS9 has been shown to specifically protect some proteins from this process before maturation, ensuring biological functionality.

Caspase 6, responsible for apoptosis execution

Monday, May 19, 2014 - 14:35

Caspase 6, also known as Apoptotic protease Mch-2, belongs to the peptidase C14A family. It functions as a downstream enzyme in the caspase activation cascade and is responsible for the execution of apoptosis. Its overexpression promotes programmed cell death.

Diseases associated with CASP6 include thoracic cancer and myocardial infarction.  Among its related super-pathways are DR3 Signaling and Apoptosis and the survival FAS signaling cascade.

A clinically relevant model of transient global brain ischemia involving cardiac arrest followed by resuscitation in dogs was utilized to study the expression and proteolytic processing of apoptosis-regulatory proteins. Immunohistochemical analysis using antibodies, which recognize processed caspase-3, -6, -8, and -10, provided evidence of time-dependent activation of these proteases in both neurons and glia in ischemia-sensitive regions of the brain....

MMP2: The extracellular matrix bids you adieu

Friday, May 16, 2014 - 08:35

MMP2 is a peptidase enzyme that belongs to the large family of matrix metalloproteinases (MMPs) which degrade the extracellular matrix (ECM) with different substrate specificities. Aberrant and unregulated expression of MMPs via deregulation of key negative check controls is strongly associated with increased tumor invasiveness, metastasis potential, and angiogenesis. This uncontrolled behavior is in direct contrast to the tightly controlled physiological systems of embryonic development, tissue remodeling, and rebuilding. MMP2 antibody immunostaining was paired with sophisticated computed tomography as viable prognostic indication assessment method for small lung adenocarcinomas1.  The Japanese group that did these studies also identified CD34, MMP9, VEGF, and TIMP-2 as other markers. Ribeiro-Silva’s...

Survivin is thrivin'

Wednesday, May 14, 2014 - 14:27

The survivin anti-apoptotic protein is the smallest member of a large family of proteins such as X-linked IAP, c-IAP1 and 2, IAP-like protein-2, melanoma IAP, Livin, and NAIP. Survivin regulates basic physiological events such as the cell cycle, tumor progression, fetal development, and cell migration. To further characterize and better understand apoptotic pathways, Xu’s group at MD Anderson used a survivin antibody in a DNA microarray screen upon promyelocytic leukemia protein (PML) target genes1. With their data, they identified a new PML4-dependent pathway that culminated in survivin as its main downstream target.

TLR9: For Whom the Cell Tolls

Monday, May 12, 2014 - 15:03

The Toll-like receptor 9 (TLR9) protein, also known as CD289, belongs to the family of Toll-like receptor (TLR) proteins which play a large role in pathogen recognition and the activation of innate immunity. Scientists using TLR9 antibodies have found that TLRs are highly conserved from Drosophila to humans, with a high degree of structural and functional homology1,2. TLR proteins in general recognize pathogen-associated molecular patterns (PAMPs) present on a diverse range of exogenous and endogenous ligands – including infectious agents - and regulate the cytokine production required for effective immunity development. Specifically, TLR9 detects unmethylated CpG dinucleotides. Studies in human glioblastoma with the TLR9 antibody found varying TLR9 RNA levels, suggesting that treatment with immunostimulating...

Gli is a top nominee in cancer research

Thursday, May 8, 2014 - 15:49

Glioma-associated oncogene 1 (Gli1) is a transcription factor within the DNA-binding zinc-finger protein family. The Sonic Hedgehog signaling pathway (SHH), which assists in embryonic development and maintaining stem cell populations in adults, activates the Gli1 protein. In the SHH Pathway, the hedgehog ligand binds to patched transmembrane protein receptor (PTC). PTC is an inhibitor of SMO, a protein receptor, and when the hedgehog ligand is present, SMO is not inhibited. Gli1 can then activate transcription along with a few other proteins, including Gli2 and Gli3. It is here that abnormal signaling from the SHH can lead to dysfunctional cells and cancer.

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53BP1 - DNA damage is no fun

Wednesday, May 7, 2014 - 09:20

The 53BP1 (p53 binding protein 1) was initially believed to be a p53 transcriptional enhancing partner, but it has now been established as an ataxia telangiectasia mutated (ATM) substrate. As a late DNA damage response (DDR) marker, 53BP1 appears during the telophase and cytokinesis phase of mitotic mammalian cells1. This was discovered when a 53BP1 antibody was applied to mitotic cells to demonstrate the absence of a full DDR response that was also sensitive to suppression by high levels of cyclin-dependent kinase1 (CDK1) activation. Additionally, the ubiquitination cascade was known to be involved in 53BP1 recruitment to DNA damage sites within cells, but Mallette’s group used a 53BP1 antibody to pinpoint the degradation of the JMJD2A/KDM4A tandem tumor domain via an E3 ubiquitin ligase ...

GAPDH (Glyceraldehyde 3-Phosphate Dehydrogenase)

Thursday, May 1, 2014 - 16:05

GAPDH is a 146 kD tetramer glycolytic pathway metabolic enzyme responsible for reversibly phosphorylating glyceraldehyde 3-phosphate. It may have other possible functions in transcriptional activation. GAPDH is highly expressed due to this housekeeping role, and its prevalent expression has allowed its use as an internal loading control – traditionally for mRNA expression comparisons – but also in protein studies. The GAPDH antibody is an excellent standard as reflected in its universal use as such in a wide range of scientific experiments and published literature.  The GAPDH antibody was employed to analyze the effect of the tumoricidal protein-lipid complex HAMLET upon cancer cells, where it was found that that HAMLET not only killed cancer cells but also activated an innate immune response in the surrounding tissues via ion channel activation and homeostasis disruption1.

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NFkB3-p65: Say that three times fast!

Wednesday, April 30, 2014 - 15:19

NF-kappa-B is a ubiquitous transcription factor involved in several biological processes such as inflammation, immunity, differentiation, cell growth, tumor genesis and apoptosis. Unlike the majority of transcription factors that reside in the nucleus, NFkB is predominantly bound to IkBs protein inhibitors and is located in the cytoplasm. There are two major signaling pathways involved in the activation of NFkB, canonical and non-canonical. [1] In the canonical NF-kB pathway, NF-kB activation is dependent on the inducible degradation of IkBs, particularly IkBa.  This leads to nuclear translocation of various NF-kB complexes, predominantly the p50/RelA dimer.  The non-canonical pathway activates the RelB/p52 NF-kB complex using a mechanism that relies on the inducible processing of p100 instead of degradation of IκBα. [1,2]

A good helper on validating your FLOW and IHC data - Rabbit IgG Isotype Control

Monday, April 28, 2014 - 14:31

Isotype controls are primarily used as negative controls in flow cytometry but they can also be used for immunohistochemistry. They are used to approximate the non-specific target primary antibody binding due to protein-protein interactions, binding to Fc receptors on target cells, non-specific protein-protein interactions, and cell autofluorescence. In order to most accurately decrease the non-specific background signal, the isotype control used should be selected to match as closely as possible to the primary antibody with respect to species, isotype (heavy and light chains), and conjugation type. Isotype controls are available for almost all immunoglobulin subclasses. The Rabbit IgG isotype control antibody has been raised against normal rabbit IgG isolated using fractionation and DEAE chromatography. Rabbit IgG isotype control antibody was used by Pallet et al in...

World DNA Day Infographic

Friday, April 25, 2014 - 10:58

World DNA Day celebrates the anniversary of the discovery of the double helix and publication of the findings by Watson, Crick, Wilkins and Franklin as well as the completion of the Human Genome Project in 2003. Congress officially declared April 25th as DNA day to commemorate both scientific achievements. Learn more about DNA in our infographic below.

World DNA Day Infographic

Resources

  1. Science Centres 
  2. DNAFTB.org 
  3. ...

The Darwin Initiative wins votes, but will it be effective and unbiased?

Thursday, April 24, 2014 - 15:53

"Your Darwin Initiative would be huge! Both in scope and impact. [it's] possibly the best way to ensure satisfaction when choosing/selecting an antibody," respondent, Novus 2014 Antibody Quality Survey.

As part of Novus's ongoing commitment to our customers we recently started a survey program to better understand the challenges faced by researchers using antibodies. Our first survey explored antibody quality—what researchers expect, what researchers would like, and what problems researchers currently face in their antibody experiments (if you haven’t filled out the survey yet, click here , or download the report on the results-to-date from here). As part of the survey, we asked survey respondents to evaluate a few hypothetical antibody quality programs that we're thinking of adopting.

Out of the four proposed programs, the most...

A versatile member from the WNT protein family

Thursday, April 24, 2014 - 15:43

The Wnt gene family is made up of structurally related genes encoding secreted signaling proteins. These proteins have been implicated in oncogenesis and developmental processes, such as cell fate regulation and embryogenesis patterning. There is high evolutionary conservation among species for the Wnt5A protein. Rao’s group from China used the Wnt5A antibody in their immunohistochemical expression survey on a wide variety of renal epithelial neoplasms in hopes of determining if Wnt5A is a useful immunohistochemical marker that allows a definitive differential diagnosis between renal oncocytomas and other subtypes within the spectrum of renal cell carcinomas (RCCs)1. Some interesting neuroscience studies detailing synaptic plasticity and chronic pain were performed with the Wnt5A antibody in HIV patients2.

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FLICE, FLICE, baby

Wednesday, April 23, 2014 - 15:58

Cell death via apoptosis is a fundamental cellular function triggered by the cell death receptor family and their ligands which signal through downstream adaptor molecules and the caspase protease family. All caspases exist in a precursor form composed of a prodomain, and large and small catalytic subunits. Caspases require a cleavage adjacent to an aspartate to liberate one large and one small subunit, which can then associate into an a2b2 tetramer. These active caspase forms are triggered by stimuli such as ligand-receptor interactions, growth factor deprivation, and cellular function inhibitors. Caspase 8 (FLICE) directly links CD95 (Fas receptor) activation into the caspase pathway, with caspase 8 overexpression inducing apoptosis. A Caspase 8 antibody was used by Berges and colleagues to characterize the role of proteosome inhibition by the inhibitor bortezomib in triggering the mitochondrial pathway of...

TRPA1: A contributor to itching and inflammation? Scratch that!

Monday, April 21, 2014 - 14:54

Transient receptor potential A1 (TRPA1) is an ion channel found on the plasma membrane of many cell types that functions in diverse sensory processes such as pain and temperature. The TRPA1 ion channel is specifically expressed in nociceptive neurons, as well as neurons who express the related protein TRPV1. In fact, Brierly et al used a TRPA1 antibody to discover that this ion channel is largely present on smaller neurons vs larger ones (1). A typical inflammatory response instigates tissue repair and eradication of harmful agents after tissue has been damaged. While TRPA1 elicits mostly a positive response, it can also cause chronic inflammation, which can lead to other diseases such as rheumatoid arthritis, chronic itching and asthma (2).

Go Ahead! Make My DNA

Friday, April 18, 2014 - 13:02

DNA methylation plays a critical role the long-term silencing of transcription and is essential for processes such as embryonic development, germline differentiation, and tissue maturation. Dnmt3a is a member of the C5-methyltransferase family that repairs cytosines in dsDNA using a unique nucleophilic attack mechanism dependent upon the transfer of a methyl group from folate intermediates onto nucleic acids.  Dnmt3a in particular performs genome-wide de novo methylation, establishes developmental DNA methylation patterns as well as paternal/maternal imprinting, and is required for methylation of most imprinted loci contained in germ cells. It can be found in both nuclear and cytoplasmic compartments and accumulates in major satellite repeats within pericentric. Canadian researchers collected compelling evidence for an essential role of Dnmt3b (but not Dnmt3a) in apoptosis of cancer cells1. The same group also published a Nature Genetics study...

Apoptosis Happens

Thursday, April 17, 2014 - 16:06

Cell death via apoptosis is a basic cellular function occurring through the cell death receptor family and their ligands which signal through downstream adaptor molecules and the caspase protease family. Caspases have a precursor form composed of a prodomain, and large and small catalytic subunit, and are activated through a cleavage adjacent to an aspartate to liberate units and allow formation of an a2b2 tetramer. Caspase 3 is a cytoplasmic caspase with two isoforms (one acts as a dominant negative inhibitor), and is involved in the activation cascade for apoptosis execution. Caspase 3 cleaves/activates SREBPs, Caspase 7, and Caspase 9. A Caspase 3 antibody was used by Berges and colleagues to assist in their detailed characterizations of...

Different roles of CD31/PECAM1

Wednesday, April 16, 2014 - 16:22

Platelet endothelial cell adhesion molecule 1 (PECAM1), also known as cluster of differentiation 31 (CD31), is a cell-surface glycoprotein expressed on platelets, monocytes, neutrophils, some types of T-cells and NK (natural killer) cells. It makes up a large portion of the endothelial cell intercellular junctions. CD31/PECAM1 is a member of the immunoglobulin superfamily and plays many different roles involving leukocyte migration under most inflammatory conditions, angiogenesis, integrin activation, atherosclerosis and thrombopoiesis.

Diseases associated with CD31/PECAM1 include angiosarcoma and pulmonary vein stenosis.  Among its related super-pathways are response to elevated platelet cytosolic Ca2+ and hemostasis.

CD31/PECAM1 is commonly used as an endothelial marker, particularly in angiogenesis. It has an important role in assisting placental and...

Osteoprotegerin: The Bone Protector

Monday, April 14, 2014 - 14:06

Osteoprotegerin (OPG) is a secretory glycoprotein that is a family member of the TNF receptor (TNFR) superfamily. Osteoprotegerin protects bone by blocking osteoclastogenesis and increasing bone density. Unlike other TNFRs, osteoprotegerin lacks a transmembrane domain as well as any apparent cell-associated signals. High levels of osteoprotegerin mRNA are found in specialized tissues such as lung, heart, kidney, and placenta. There is evidence that osteoprotegerin plays a role in degenerative arterial disease. Sandra et al used ELISA studies employing the osteoprotegerin antibody with hopes of understanding the bone resorption that occurs with the bone tumor ameloblastoma (1). Their findings seem to suggest that ameloblastoma secretes RANKL and TNF alpha. Some interesting studies looking at bone loss in inflammatory bowel disease (IBD) used the...

KLF4 opens the door for stem cell research

Friday, April 11, 2014 - 15:13

KLF4 (Kruppel-like factor 4, Epithelial zinc finger protein EZF) is a zinc finger transcription factor thought to be involved in developmental differentiation and proliferation. It is considered a pluripotency reprogramming factor (PRF) due to its ability to change cell fate via gene expression conversion. Other PRFs including Sox2, Oct4 and KLF4, as well as a discussion about their capabilities, are reviewed by Jauch et al in hopes of enabling the engineering and optimization of PRFs1. Interestingly, recent studies suggest KLF4 may play a role in vascular disease due to its expression in multiple vascular cell types, but this remains to be seen2. Huang’s group used a KLF4 antibody to examine the first generation conversion of quiescent bovine cells into induced pluripotent stem cells (IPSCs) with a novel virus-free poly-promoter vector3.

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